BLASTN 2.0MP-WashU [04-May-2006] [sol8-ultrav9-I32LPF64 2006-05-07T21:58:25]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Notice:  this program and its default parameter settings are optimized to find
nearly identical sequences rapidly.  To identify weak protein similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.

Query=  JC2b259e06
        (84 letters)

WARNING:  No precomputed values for Lambda, K and H are available for the
          +5,-8 scoring matrix, regardless of the chosen gap penalties.
          Unless overridden on the command line, computed values for ungapped
          alignments will be used, but the reported E-values and P-values may
          be much too low.

Database:  dicty.contig
           1584 sequences; 24,539,573 total letters.

WARNING:  Use of the hspsepSmax parameter should be considered with long
          database sequences, to improve the biological relevance of the HSP
          groups that are assembled and to improve the statistical
          discrimination of these groups from random background.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

sdi45A331e08.q1c 910614 letters                                420  4.5e-40   1
JC2a69c12.s1 800853 letters                                    158  3.3e-09   1


>sdi45A331e08.q1c 910614 letters
        Length = 910,637

  Minus Strand HSPs:

 Score = 420 (157.3 bits), Expect = 4.5e-40, P = 4.5e-40
 Identities = 84/84 (100%), Positives = 84/84 (100%), Strand = Minus / Plus

Query:     84 AATGGTTTTTACCTGTTGTAGTAGTTGTACCAGTTGTAGGTGTTGCTTTTATGATAATCA 25
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572819 AATGGTTTTTACCTGTTGTAGTAGTTGTACCAGTTGTAGGTGTTGCTTTTATGATAATCA 572878

Query:     24 TAATGTTTTTGATTTACAAAAGAA 1
              ||||||||||||||||||||||||
Sbjct: 572879 TAATGTTTTTGATTTACAAAAGAA 572902

 Score = 252 (95.0 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 72/85 (84%), Positives = 72/85 (84%), Strand = Minus / Plus

Query:     84 AATGGTTTTTACCTGTTGTAGTAGTTGTACCAGTTGTAGGTGTTGCTTTTATGATAATCA 25
              ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||  |||| |
Sbjct: 576720 AATGGTTTTTACCTGTTGTAGTAGTTGTACCAGTTGTTGGTTTTGCTCTTATTTTAATTA 576779

Query:     24 TAATGTTTT-TGATTTACAAAAGAA 1
              || | |||  | ||||| |||| ||
Sbjct: 576780 TACT-TTTAATAATTTATAAAAAAA 576803


>JC2a69c12.s1 800853 letters
        Length = 800,863

  Plus Strand HSPs:

 Score = 158 (60.1 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 66/86 (76%), Positives = 66/86 (76%), Strand = Plus / Plus

Query:      2 TCTTTTGTAAATCAAA-AAC--ATTATGATTATCATAAAAGCAACACCTACAACTGGTAC 58
              |||||| ||||| | | |||  ||||| || || ||    ||| |||||||| ||||| |
Sbjct: 328494 TCTTTTATAAATTATAGAACCAATTATAATAATGATT---GCAGCACCTACAGCTGGTGC 328550

Query:     59 AACTACTACAACAGGTAAAAACCATT 84
              ||| | ||| || |||||||||||||
Sbjct: 328551 AACAATTACCACTGGTAAAAACCATT 328576


Parameters:
  S=140
  W=11
  sort_by_highscore
  N=-8
  B=120
  gi
  V=120
  M=5
  S2=109
  hspmax=8

  ctxfactor=2.00
  E=3.83334e-07

  Query                        -----  As Used  -----    -----  Computed  ----
  Strand MatID Matrix name     Lambda    K       H      Lambda    K       H
   +1      0   +5,-8           0.257   0.358   0.965    same    same    same
               Q=10,R=10       0.257   0.358   0.965     n/a     n/a     n/a
   -1      0   +5,-8           0.257   0.358   0.965    same    same    same
               Q=10,R=10       0.257   0.358   0.965     n/a     n/a     n/a

  Query
  Strand MatID  Length  Eff.Length     E     S  W   T  X   E2      S2
   +1      0       84        84   1.9e-07  140 11 n/a 54  2.6e-08 109
                                                      54  0.046    54
   -1      0       84        84   1.9e-07  140 11 n/a 54  2.6e-08 109
                                                      54  0.046    54


Statistics:

  Database:  dicty.contig
   Title:  dicty.contig
   Posted:  7:34:48 AM CET Jan 18, 2005
   Modified:  7:34:48 AM MET Jan 18, 2005
   Created:  7:34:47 AM MET Jan 18, 2005
   Format:  XDF-1
   # of letters in database:  24,539,573
   # of sequences in database:  1584
   # of database sequences satisfying E:  2
  No. of states in DFA:  82 (164 KB)
  Total size of DFA:  171 KB (2053 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  1
  Search cpu time:  0.13u 0.04s 0.17t   Elapsed:  00:00:01
  Total cpu time:  0.14u 0.08s 0.22t   Elapsed:  00:00:01
  Start:  Wed Oct 10 11:30:37 2007   End:  Wed Oct 10 11:30:38 2007
WARNINGS ISSUED:  2
//
