# this works as a bash include
#
#COMM test SeqMotif.pl, SeqLab::MotifLib, SeqLab::MotifHMMer
#COMM - esp. SeqLab::MotifLib::*Locate
#COMM - esp. complete SeqLab::MotifHMMer, incl. reverse-complement matching
#

# give include precedence to code directory, perl -I would not work!
PERLPATH_SV="$PERLPATH"
export PERLPATH="$dircode"
export MOTIFPATH="$dirtest"

perl "$dircode"/SeqMotif.pl -SearchMotif=$dirtest/${setstamp}_mtf.hmm  \
  $dirtest/${setstamp}_seq.fa  \
| grep -v '^#'

export PERLPATH="$PERLPATH_SV"
