# this works as a bash include
#
#COMM SeqLab::SeqStreamIn, SeqLab::SeqFormat, SeqHandle.pl, SeqLab::SeqStreamOut
#COMM - esp. SeqHandle.pl with input and output file being identical
#COMM   => SeqLab::SeqStreamOut option -file, and check/solution for input/output
#COMM   clash in _CurrHandle()

# give include precedence to code directory, perl -I would not work!
PERLPATH_SV="$PERLPATH"
export PERLPATH=$dircode

fin=$dirtest/test_seq_ntmult.fa
ftmp=$dirtest/${setstamp}_tmp
cp $fin $ftmp
perl $dircode/SeqHandle.pl -cat $ftmp -OutSeq=$ftmp
diff $fin $ftmp

# tidy up
rm -f $ftmp
export PERLPATH="$PERLPATH_SV"
