BLASTN 2.2.17 (Aug-26-2007)
RID: GT4MN1R1012


Database: NCBI Genomic Reference Sequences
           7249 sequences; 12,065,897,351 total letters
Query=  JC2b259e06
Length=540


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

ref|NC_007088.4|  Dictyostelium discoideum AX4 chromosome 2, comp   987    0.0  
ref|NC_007087.2|  Dictyostelium discoideum AX4 chromosome 1, comp   305    5e-80

ALIGNMENTS
>ref|NC_007088.4| Dictyostelium discoideum AX4 chromosome 2, complete sequence
Length=8470428

 Score =  987 bits (534),  Expect = 0.0
 Identities = 538/540 (99%), Gaps = 0/540 (0%)
 Strand=Plus/Minus

Query  1       TTCTTTTGTAAATCAAAAACATTATGATTATCATAAAAGCAACACCTACAACTGGTACAA  60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  572879  TTCTTTTGTAAATCAAAAACATTATGATTATCATAAAAGCAACACCTACAACTGGTACAA  572820

Query  61      CTACTACAACAGGTAAAAACCATTTTCGAGATGAATCATCATCACCACATTCAGATTTGA  120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  572819  CTACTACAACAGGTAAAAACCATTTTCGAGATGAATCATCATCACCACATTCAGATTTGA  572760

Query  121     AATCATTTGTAAGTAAAACTGAAAAATCTGGATCAATTAAACATTCATTAATACAATGAG  180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  572759  AATCATTTGTAAGTAAAACTGAAAAATCTGGATCAATTAAACATTCATTAATACAATGAG  572700

Query  181     GTAAATTTAATGATACAATAATTGAATTTGAATCATTTCTTGCGCTTGTTGTAAAAAATG  240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  572699  GTAAATTTAATGATACAATAATTGAATTTGAATCATTTCTTGCGCTTGTTGTAAAAAATG  572640

Query  241     TTGATCTACCATCGGACAATACTTTATTAATGAATCTAGCAGAGAAAATTTTATTATTTT  300
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  572639  TTGATCTACCATCGGACAATACTTTATTAATGAATCTAGCAGAGAAAATTTTATTATTTT  572580

Query  301     TTGAAATTTTGATATAATTAAATGTTGATATATCATTTACATTGGTTGTATCGATTTCTG  360
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  572579  TTGAAATTTTGATATAATTAAATGTTGATATATCATTTACATTGGTTGTATCGATTTCTG  572520

Query  361     TGTCTTTTGAATTACAATTATTAATTTTATCGATTTTATCAACTGATGATATTAATTCTA  420
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  572519  TGTCTTTTGAATTACAATTATTAATTTTATCGATTTTATCAACTGATGATATTAATTCTA  572460

Query  421     ATTTTAAAGGATTTAAATTACTTTGATATGTATAATTTGCAATTGAAATTGTGAATTTAA  480
               ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  572459  ATTTTAAAGTATTTAAATTACTTTGATATGTATAATTTGCAATTGAAATTGTAAATTTAA  572400

Query  481     TTGAACCACTTGAAACAACGAATGATGTACCCGCAAATGTAAATTCTTTACCATTTTTAT  540
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  572399  TTGAACCACTTGAAACAACGAATGATGTACCCGCAAATGTAAATTCTTTACCATTTTTAT  572340


 Score =  848 bits (459),  Expect = 0.0
 Identities = 513/539 (95%), Gaps = 4/539 (0%)
 Strand=Plus/Minus

Query  4       TTTTGTAAATCA-AAAACATTATGATTATCATAAAAGCAACACCTACAACTGGTACAACT  62
               |||| ||||| |  ||| | ||| ||||  |||| ||||| ||| |||||||||||||||
Sbjct  576777  TTTTATAAATTATTAAA-AGTATAATTAAAATAAGAGCAAAACCAACAACTGGTACAACT  576719

Query  63      ACTACAACAGGTAAAAACCATTTTCGAGATGAATCATCATCACCACATTCAGATTTGAAA  122
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576718  ACTACAACAGGTAAAAACCATTTTCGAGATGAATCATCATCACCACATTCAGATTTGAAA  576659

Query  123     TCATTTGTAAGTAAAACTGAAAAATCTGGATCAATTAAACATTCATTAATACAATGAGGT  182
               ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  576658  TCATTTGAAAGTAAAACTGAAAAATCTGGATCAATTAAACATTCATTAATACAATGTGGT  576599

Query  183     AAATTTAATGATACAATAATTGAATTTGAATCATTTCTTGCGCTTGTTGTAAAAAATGTT  242
               ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  576598  AAATTTAATGACACAATAATTGAATTTGAGTCATTTCTTGCGCTTGTTGTAAAAAATGTT  576539

Query  243     GATCTACCATCGGACAATACTTTATTAATGAATCTAGCAGAGAAAAT-TTTATTATTTTT  301
               ||||| ||||| || ||||||||||| ||||||||| |||||||||| ||| ||||| ||
Sbjct  576538  GATCTTCCATCAGATAATACTTTATTTATGAATCTACCAGAGAAAATATTT-TTATTCTT  576480

Query  302     TGAAATTTTGATATAATTAAATGTTGATATATCATTTACATTGGTTGTATCGATTTCTGT  361
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576479  GGAAATTTTGATATAATTAAATGTTGATATATCATTTACATTGGTTGTATCGATTTCTGT  576420

Query  362     GTCTTTTGAATTACAATTATTAATTTTATCGATTTTATCAACTGATGATATTAATTCTAA  421
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576419  GTCTTTTGAATTACAATTATTAATTTTATCGATTTTATCAACTGATGATATTAATTCTAA  576360

Query  422     TTTTAAAGGATTTAAATTACTTTGATATGTATAATTTGCAATTGAAATTGTGAATTTAAT  481
               |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576359  TTTTAAAGTATTTAAATTACTTTGATATGTATAATTTGCAATTGAAATTGTGAATTTAAT  576300

Query  482     TGAACCACTTGAAACAACGAATGATGTACCCGCAAATGTAAATTCTTTACCATTTTTAT  540
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576299  TGAACCACTTGAAACAACGAATGATGTACCCGCAAATGTAAATTCTTTACCATTTTTAT  576241


 Score =  780 bits (422),  Expect = 0.0
 Identities = 470/492 (95%), Gaps = 8/492 (1%)
 Strand=Plus/Minus

Query  50      AACTGGTACAACTACT-ACAACAGGTAAAAACCATTTTCGAGATGAATCATCATCACCAC  108
               ||| |||||||||| | ||||||||||||||||||||||||||||    |  ||||||||
Sbjct  583399  AACAGGTACAACTA-TAACAACAGGTAAAAACCATTTTCGAGATG----A--ATCACCAC  583347

Query  109     ATTCAGATTTGAAATCATTTGTAAGTAAAACTGAAAAATCTGGATCAATTAAACATTCAT  168
               ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct  583346  ATTCAGATTTGAAATCATTTGAAAGTAAAACTGAAAAATCTGGATCAATTAAACATTCGT  583287

Query  169     TAATACAATGAGGTAAATTTAATGATACAATAATTGAATTTGAATCATTTCTTGCGCTTG  228
               | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  583286  TTATACAATGTGGTAAATTTAATGATACAATAATTGAATTTGAATCGTTTCTTGCGCTTG  583227

Query  229     TTGTAAAAAATGTTGATCTACCATCGGACAATACTTTATTAATGAATCTAGCAGAGAAAA  288
               ||||||||||||||||||| ||||| || ||||||||||| ||||||||| |||||||||
Sbjct  583226  TTGTAAAAAATGTTGATCTTCCATCAGATAATACTTTATTTATGAATCTACCAGAGAAAA  583167

Query  289     TTTTATTATTTTTTGAAATTTTGATATAATTAAATGTTGATATATCATTTACATTGGTTG  348
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  583166  TTTTATTATTTTTTGAAATTTTGATATAATTAAATGTTGATATATCATTTACATTGGTTG  583107

Query  349     TATCGATTTCTGTGTCTTTTGAATTACAATTATTAATTTTATCGATTTTATCAACTGATG  408
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  583106  TATCGATTTCTGTGTCTTTTGAATTACAATTATTAATTTTATCGATTTTATCAACTGATG  583047

Query  409     ATATTAATTCTAATTTTAAAGGATTTAAATTACTTTGATATGTATAATTTGCAATTGAAA  468
               | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  583046  ACATTAATTCTAATTTTAAAGTATTTAAATTACTTTGATATGTATAATTTGCAATTGAAA  582987

Query  469     TTGTGAATTTAATTGAACCACTTGAAACAACGAATGATGTACCCGCAAATGTAAATTCTT  528
               |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  582986  TTGTAAATTTAATTGAACCACTTGAAACAACGAATGATGTACCCGCAAATGTAAATTCTT  582927

Query  529     TACCATTTTTAT  540
               ||||||||||||
Sbjct  582926  TACCATTTTTAT  582915


 Score =  300 bits (162),  Expect = 2e-78
 Identities = 323/400 (80%), Gaps = 14/400 (3%)
 Strand=Plus/Minus

Query  148      CTGGATCAATTAAACATTCATTA-ATACAATGAGGTAAATTTAATGATACAATAATTGAA  206
                |||||||||||| ||||||   | | |||||||||||||||||| | |   |||||||||
Sbjct  2192980  CTGGATCAATTATACATTC-GGATACACAATGAGGTAAATTTAAAGTTGTTATAATTGAA  2192922

Query  207      TTTGAATCATTTCTTG-CGCTTGTTGTAAAAAATGTTGATCTACCATCGGACAAT-ACTT  264
                |||||||||||||| |  | |||  || || ||||||||||||||||| ||| || ||||
Sbjct  2192921  TTTGAATCATTTCTAGTAG-TTGAAGTTAAGAATGTTGATCTACCATCTGAC-ATAACTT  2192864

Query  265      TATTAATGAATCTAGCAGAGAAAATTTTATTATTTTTTGAAATTTTGATATAATTAAATG  324
                |||| || |||||| |    ||||||||||||||  |||| ||| | |||||||||||||
Sbjct  2192863  TATTTATAAATCTACCTTCTAAAATTTTATTATTCCTTGAGATTCTAATATAATTAAATG  2192804

Query  325      TTGATATATCATTTACATTGGTTGTATCGATTTCTGT-GTCTTTTGAATTACAATTA-TT  382
                |||||| || |||   |||  |||||||||||||  | |  ||| |||||||||| | ||
Sbjct  2192803  TTGATAAATTATTCGTATTACTTGTATCGATTTCAATAG-ATTTAGAATTACAATCAGTT  2192745

Query  383      AATTTTATCGATT-TTATCAACT-GATGATATTAATTCTAATTTTAAAGGATTTAAATTA  440
                  ||||||  ||| ||||| | |  |||| |||||||| ||||| || | ||||||||||
Sbjct  2192744  -CTTTTAT-TATTATTATC-AGTCAATGAAATTAATTCCAATTTCAATGAATTTAAATTA  2192688

Query  441      CTTTGATATGTATAATTTGCAATTGAAATTGTGAATTTAATTGAACCACTTGAAACAACG  500
                ||||||||||||||||||  |||||||||||| ||||||||||||||||||| ||| |  
Sbjct  2192687  CTTTGATATGTATAATTTAAAATTGAAATTGTAAATTTAATTGAACCACTTGGAACTATA  2192628

Query  501      AATGATGTACCCGCAAATGTAAATTCTTTACCATTTTTAT  540
                ||   || ||| |||||  |||||||||||||||||||||
Sbjct  2192627  AAACTTGAACCTGCAAAAATAAATTCTTTACCATTTTTAT  2192588


>ref|NC_007087.2| Dictyostelium discoideum AX4 chromosome 1, complete sequence
Length=4923396

 Score =  305 bits (165),  Expect = 5e-80
 Identities = 288/346 (83%), Gaps = 14/346 (4%)
 Strand=Plus/Plus

Query  150      GGATCAATTAA-ACATTCATTAATACAATGAGGTAAATTTAATGAT-ACAATAATTGAAT  207
                |||||||  || ||||||||| |||||||| ||||||||||||| | | |||||||||||
Sbjct  4062836  GGATCAA-CAACACATTCATTTATACAATGTGGTAAATTTAATG-TAATAATAATTGAAT  4062893

Query  208      TTGAATCA-TTTCTTG-CGCTTGTTGTAAAA-AATGTTGATCTACCATCGGACAATACTT  264
                |||||||| ||| |||  | |||||| |||| || |||| |||   ||| || | |||||
Sbjct  4062894  TTGAATCAGTTT-TTGAAG-TTGTTG-AAAAGAAAGTTGGTCTTGAATCAGAGATTACTT  4062950

Query  265      TATTAATGAATCTAGCAGAGAAAATTTTATTATTTTTTGAAATTTTGATATAATTAAATG  324
                ||||||| |||||| |||  ||||||||||||||||||||||||||||||||| |||| |
Sbjct  4062951  TATTAATAAATCTACCAGCTAAAATTTTATTATTTTTTGAAATTTTGATATAACTAAAAG  4063010

Query  325      TTGATAT-ATCATTTACATTGGTTGTATCGATTTCTGTGTCTTTTGAATTACAATTATTA  383
                | ||| | |||||| | ||| |||||||| ||||| || | ||||| ||||||||  || 
Sbjct  4063011  TGGAT-TGATCATTAATATTTGTTGTATCAATTTCAGTATTTTTTGTATTACAATC-TTC  4063068

Query  384      ATTTT-ATCGATTTTATCAACTGATGATATTAATTCTAATTTTAAAGGATTTAAATTACT  442
                ||||| ||  |||| |||||||| ||||||||| || |||| ||  | ||||||| ||||
Sbjct  4063069  ATTTTTATTAATTTGATCAACTGCTGATATTAAATCCAATTGTAGTGTATTTAAAGTACT  4063128

Query  443      TTGATATGTATAATTTGCAATTGAAATTGTGAATTTAATTGAACCA  488
                |||||| |||||||||| ||||||||||||||||||||| ||||||
Sbjct  4063129  TTGATAAGTATAATTTGTAATTGAAATTGTGAATTTAATAGAACCA  4063174



  Database: NCBI Genomic Reference Sequences
    Posted date:  Oct 9, 2007  5:50 PM
  Number of letters in database: -819,004,533
  Number of sequences in database:  7,249
Lambda     K      H
    1.33    0.621     1.12 
Gapped
Lambda     K      H
    1.33    0.621     1.12 
Matrix: blastn matrix:1 -2
Gap Penalties: Existence: 0, Extension: 0
Number of Sequences: 7249
Number of Hits to DB: 3167166
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 540
Length of database: 12065897351
Length adjustment: 31
Effective length of query: 509
Effective length of database: 12065672632
Effective search space: 6141427369688
Effective search space used: 6141427369688
A: 0
X1: 19 (36.5 bits)
X2: 32 (59.1 bits)
X3: 54 (99.7 bits)
S1: 19 (36.2 bits)
S2: 21 (39.9 bits)

