Conserved exchange of paralog proteins during neurogenesis
11/20/2020
Section 1 Introduction
This is the complete markdown workflow of the code referring to Di Fraia et al.
1.1 About the built-in packages
This docker container comes with 3 in house produced R packages that contains
useful functions for working with this kind of data. The proteomicstools
packages contains useful functions for manipulating proteomics data matrix,
plotting purposes and contains useful functions for dealing with protein
complexes. The paralogstools
packages functions are used to more easily work
with Paralog genes. The spatialR
package is a very broad and unspecific
packages, used by the author to manipulate various data sources and types. It
contains lots of different function for working with different kind of data
structures. During this workflow is mainly used to running GOEnrichment
analysis. Lots of these packages are layed out using other packages, expecially
the ones coming from the BioconductoR consortium.
The majority of functions present in each of the packages is documented as much as possible.
1.2 Getting Started
To correctly link the file path to this documentation please set your working
directory inside the Markdown
folders.
setwd('Markdown')
You can either work following and running again the .Rmd
files present inside
the Markdown
folder, or alternatively run your independent R session to
explore the data by yourself, just referring at the complete markdown for some
reference.