Supp Fig 3
#Assemble
supp.3 <- plot_grid(p15RNA,p34Tiss,p28Tiss,p08RNA,nrow=2,
labels = c("A","B","C","D"))
## Warning: It is deprecated to specify `guide = FALSE` to remove a guide. Please
## use `guide = "none"` instead.
#Save
pdf(paste("../out/figures/FigSupp3/Supp3_",Sys.Date(),'.pdf',sep = ''),
width = 11,height = 6)
supp.3
dev.off()
## png
## 2
## R version 4.0.5 (2021-03-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: SUSE Linux Enterprise Server 15 SP2
##
## Matrix products: default
## BLAS: /misc/leiron/biosw/src/R-4.0.5/lib64/R/lib/libRblas.so
## LAPACK: /misc/leiron/biosw/src/R-4.0.5/lib64/R/lib/libRlapack.so
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=C
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] grid parallel stats4 stats graphics grDevices datasets
## [8] utils methods base
##
## other attached packages:
## [1] ggplotify_0.0.7 cowplot_1.1.1 ggpubr_0.4.0
## [4] egg_0.4.5 gtable_0.3.0 org.Hs.eg.db_3.12.0
## [7] data.table_1.14.0 factoextra_1.0.7 biomaRt_2.46.3
## [10] rrvgo_1.2.0 topGO_2.42.0 SparseM_1.81
## [13] GO.db_3.12.1 graph_1.68.0 org.Dr.eg.db_3.12.0
## [16] AnnotationDbi_1.52.0 IRanges_2.24.1 S4Vectors_0.28.1
## [19] Biobase_2.50.0 BiocGenerics_0.36.1 RColorBrewer_1.1-2
## [22] ggrepel_0.9.1 Cairo_1.5-12.2 gridExtra_2.3
## [25] spatialR_0.1.0 dplyr_1.0.7 ggplot2_3.3.5
## [28] reshape2_1.4.4 paralogstools_0.1.0 proteomicstools_0.1.0
##
## loaded via a namespace (and not attached):
## [1] Hotelling_1.0-5 corpcor_1.6.9
## [3] class_7.3-19 Rsamtools_2.6.0
## [5] foreach_1.5.1 crayon_1.4.1
## [7] MASS_7.3-54 alakazam_1.1.0
## [9] nlme_3.1-152 backports_1.2.1
## [11] reprex_2.0.0 ellipse_0.4.2
## [13] impute_1.64.0 GOSemSim_2.16.1
## [15] rlang_0.4.11 XVector_0.30.0
## [17] caret_6.0-88 readxl_1.3.1
## [19] limma_3.46.0 data.tree_1.0.0
## [21] BiocParallel_1.24.1 rjson_0.2.20
## [23] bit64_4.0.5 glue_1.4.2
## [25] pheatmap_1.0.12 UpSetR_1.4.0
## [27] vsn_3.58.0 haven_2.4.1
## [29] tidyselect_1.1.1 SummarizedExperiment_1.20.0
## [31] rio_0.5.27 XML_3.99-0.6
## [33] tidyr_1.1.3 GenomicAlignments_1.26.0
## [35] org.Mm.eg.db_3.12.0 xtable_1.8-4
## [37] magrittr_2.0.1 evaluate_0.14
## [39] ncdf4_1.17 zlibbioc_1.36.0
## [41] rstudioapi_0.13 bslib_0.2.5.1
## [43] rpart_4.1-15 wordcloud_2.6
## [45] shiny_1.6.0 xfun_0.24
## [47] tm_0.7-8 askpass_1.1
## [49] clue_0.3-59 cluster_2.1.2
## [51] caTools_1.18.2 pcaMethods_1.82.0
## [53] mosaicCore_0.9.0 tibble_3.1.2
## [55] interactiveDisplayBase_1.28.0 lpSolve_5.6.15
## [57] ape_5.5 dendextend_1.15.1
## [59] Biostrings_2.58.0 png_0.1-7
## [61] reshape_0.8.8 ipred_0.9-11
## [63] withr_2.4.2 slam_0.1-48
## [65] bitops_1.0-7 ggforce_0.3.3
## [67] plyr_1.8.6 cellranger_1.1.0
## [69] mzID_1.28.0 e1071_1.7-7
## [71] MESS_0.5.7 pROC_1.17.0.1
## [73] coda_0.19-4 pillar_1.6.1
## [75] gplots_3.1.1 GlobalOptions_0.1.2
## [77] cachem_1.0.5 geepack_1.3-2
## [79] fs_1.5.0 NLP_0.2-1
## [81] kernlab_0.9-29 GetoptLong_1.0.5
## [83] tidyverse_1.3.1 vctrs_0.3.8
## [85] ellipsis_0.3.2 generics_0.1.0
## [87] lava_1.6.9 tools_4.0.5
## [89] foreign_0.8-81 MSnbase_2.16.1
## [91] munsell_0.5.0 tweenr_1.0.2
## [93] networkD3_0.4 geeM_0.10.1
## [95] proxy_0.4-26 DelayedArray_0.16.3
## [97] fastmap_1.1.0 compiler_4.0.5
## [99] abind_1.4-5 httpuv_1.6.1
## [101] segmented_1.3-4 plotly_4.9.4.1
## [103] GenomeInfoDbData_1.2.4 prodlim_2019.11.13
## [105] lattice_0.20-44 utf8_1.2.1
## [107] later_1.2.0 BiocFileCache_1.14.0
## [109] recipes_0.1.16 jsonlite_1.7.2
## [111] ggformula_0.10.1 affy_1.68.0
## [113] airr_1.3.0 scales_1.1.1
## [115] carData_3.0-4 lazyeval_0.2.2
## [117] promises_1.2.0.1 car_3.0-11
## [119] doParallel_1.0.16 rmarkdown_2.8
## [121] openxlsx_4.2.4 rARPACK_0.11-0
## [123] UniprotR_2.0.6 Rtsne_0.15
## [125] forcats_0.5.1 mixOmics_6.14.1
## [127] pRoloc_1.30.0 treemap_2.4-2
## [129] igraph_1.2.6 survival_3.2-11
## [131] yaml_2.2.1 qdapRegex_0.7.2
## [133] htmltools_0.5.1.1 memoise_2.0.0
## [135] viridisLite_0.4.0 digest_0.6.27
## [137] assertthat_0.2.1 mime_0.11
## [139] rappdirs_0.3.3 ggstance_0.3.5
## [141] RSQLite_2.2.7 LaplacesDemon_16.1.6
## [143] blob_1.2.1 preprocessCore_1.52.1
## [145] labeling_0.4.2 splines_4.0.5
## [147] AnnotationHub_2.22.1 mixtools_1.2.0
## [149] ProtGenerics_1.22.0 RCurl_1.98-1.3
## [151] broom_0.7.8 hms_1.1.0
## [153] modelr_0.1.8 gprofiler2_0.2.0
## [155] colorspace_2.0-1 BiocManager_1.30.16
## [157] sampling_2.9 GenomicRanges_1.42.0
## [159] shape_1.4.6 nnet_7.3-16
## [161] sass_0.4.0 Rcpp_1.0.7
## [163] mclust_5.4.7 bookdown_0.22
## [165] mvtnorm_1.1-2 circlize_0.4.13
## [167] fansi_0.5.0 ModelMetrics_1.2.2.2
## [169] R6_2.5.0 ggridges_0.5.3
## [171] lifecycle_1.0.0 labelled_2.8.0
## [173] zip_2.2.0 curl_4.3.2
## [175] ggsignif_0.6.2 affyio_1.60.0
## [177] jquerylib_0.1.4 robustbase_0.93-8
## [179] Matrix_1.3-4 mzR_2.24.1
## [181] iterators_1.0.13 stringr_1.4.0
## [183] gower_0.2.2 htmlwidgets_1.5.3
## [185] polyclip_1.10-0 purrr_0.3.4
## [187] gridGraphics_0.5-1 gbm_2.1.8
## [189] rvest_1.0.0 ComplexHeatmap_2.6.2
## [191] MALDIquant_1.19.3 mgcv_1.8-36
## [193] MLInterfaces_1.70.0 openssl_1.4.4
## [195] codetools_0.2-18 matrixStats_0.59.0
## [197] lubridate_1.7.10 FNN_1.1.3
## [199] randomForest_4.6-14 gtools_3.9.2
## [201] prettyunits_1.1.1 dbplyr_2.1.1
## [203] gridBase_0.4-7 RSpectra_0.16-0
## [205] GenomeInfoDb_1.26.7 DBI_1.1.1
## [207] highr_0.9 httr_1.4.2
## [209] KernSmooth_2.23-20 stringi_1.6.2
## [211] progress_1.2.2 farver_2.1.0
## [213] annotate_1.68.0 viridis_0.6.1
## [215] hexbin_1.28.2 magick_2.7.2
## [217] timeDate_3043.102 seqinr_4.2-5
## [219] xml2_1.3.2 rvcheck_0.1.8
## [221] ade4_1.7-17 readr_1.4.0
## [223] DEoptimR_1.0-9 BiocVersion_3.12.0
## [225] bit_4.0.4 MatrixGenerics_1.2.1
## [227] pkgconfig_2.0.3 rstatix_0.7.0
## [229] knitr_1.33